Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs36122765 chr16:71504183 G/C 0 177 24.52 29.02 3.17 KM Plot
PCPG rs36138515 chr2:242536068 G/T 2.99E-5 176 25.87 27.27 20.28 KM Plot
PCPG rs361649 chr22:21155184 C/CT 1.59E-5 171 25 31.68 10.95 KM Plot
PCPG rs36204974 chr16:89845178 T/TAC 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs367903633 chr19:14727831 TCCTGA/T 6.41E-6 173 25.6 24.32 25.17 KM Plot
PCPG rs368565398 chr16:89952846 T/A 0.000179 175 25.87 20.28 36.37 KM Plot
PCPG rs368780524 chr3:80451014 TAGG/T 0.000182 171 25.4 25.92 22.52 KM Plot
PCPG rs368810 chr17:3236930 A/G 0.000207 173 18.1 25.87 26.88 KM Plot
PCPG rs369303015 chr20:5986250 ACAAT/A 0 176 25.53 25.53 2.93 KM Plot
PCPG rs369410555 chr20:6028265 A/T 0 178 25.47 23.53 2.93 KM Plot
PCPG rs369764615 chr7:105154057 GC/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs370002385 chr2:107245520 TG/T 0.000282 174 26.57 23.88 25.53 KM Plot
PCPG rs370047811 chr7:105149471 CAAA/C 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs370344268 chr11:18142774 C/A 4.13E-6 175 27.2 23.53 10.3 KM Plot
PCPG rs370361 chr17:3237419 A/G 0.000207 173 18.1 25.87 26.88 KM Plot